| ID | Title | Section/Topic | Authors | Keywords |
|---|
| 562 | A de novo detection pipeline for alternative splicing based on single-molecule long-read isoforms using Amborella trichopoda
Log in to add this item to your schedule | Genomics / Proteomics | Liu, Xiaoxian; Barbazuk, William B.; Soltis, Pamela S.; Soltis, Douglas E.. | RNA alternative splicing
de novo pipeline
Amborella trichopoda
Transcriptome |
| 42 | A functional genomics approach (PIPE, Protein-protein Interaction Prediction Engine) to identify new early maturity alleles in soybean for Western Canada
Log in to add this item to your schedule | Genomics / Proteomics | Samanfar, Bahram; Cober, Elroy; Charette, Martin; Schoenrock, Andrew; Dehne, Frank; Golshani, Ashkan; Molnar, Steve. | Soybean
Early maturity
Flowering pathway
E10
SSR
SNP
Bioinformatics
PPI
PIPE
Functional genomics |
| 147 | Changes in DNA methylation and the domestication of tomato
Log in to add this item to your schedule | Genomics / Proteomics | Lira-Medeiros, Catarina; Voloch, Carolina; Litt, Amy. | epigenetcs
cytosine methylation
tomato
domestication |
| 792 | Comparative genomic analysis of Apocynaceae plastomes: Pseudogenes, repeat content, and molecular evolution
Log in to add this item to your schedule | Genomics / Proteomics | Walter, Lauren; Livshultz, Tatyana; Straub, Shannon C.K.. | Apocynaceae
Carissa
Plastome
accD |
| 634 | Comparative Genomics of Disease Resistance Genes in Soybean (Glycine max) and Common Bean (Phaseolus vulgaris)
Log in to add this item to your schedule | Genomics / Proteomics | Nepal, Madhav P.; Neupane, Surendra; Mathew, Febina; Ma, Qin; Varenhorst, Adam; Andersen, Ethan J.; Reese, R. Neil. | Comparative GenomicsÂ
Disease Resistance GenesÂ
legumes
Fabaceae
Gene Clustering
Selection Pressure
Synteny
TNL Genes |
| 488 | Comparative genomics of Parasitaxus usta, a podocarp conifer with a unique form of heterotrophy
Log in to add this item to your schedule | Genomics / Proteomics | Gerelle, Wesley; Lam, Vivienne K. Y.; Graham, Sean W.. | mycoheterotrophy
heterotrophy
Transcriptome
evolution
1kp
gene ontology
Gene loss |
| 180 | Comparative transcriptome analysis of beach morning glory reveals important salt adaptation mechanisms
Log in to add this item to your schedule | Genomics / Proteomics | Luo, Yan; Freese, Daniella; Reid, Robert; Zhang, Heng-You; Miller, Thomas E.; Loraine, Ann; Song, Bao-Hua. | comparative transcriptome
halophyte
glycophyte
salt tolerance
Ipomoea |
| 380 | Comparative transcriptomics of Crassulacean acid metabolism in Yucca
Log in to add this item to your schedule | Genomics / Proteomics | Heyduk, Karolina; Ray, Jeremy; Leebens-Mack, Jim. | photosynthesis
Transcriptomics
comparative transcriptome
RNAseq |
| 870 | Comparative transcriptomics of the genus Cuscuta
Log in to add this item to your schedule | Genomics / Proteomics | McNeal, Joel R.. | Cuscuta
Transcriptome
polyploidy
Molecular evolution |
| 806 | Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns
Log in to add this item to your schedule | Genomics / Proteomics | Guo, Wenhu; Mower, Jeff. | ferns
mitochondrial genome
repetitive DNA
introns
RNA editing
Ophioglossum
Psilotum |
| 375 | De novo transcriptome assembly and gene expression profiling of the desiccation-tolerant desert green alga Scenedesmus rotundus during desiccation and rehydration
Log in to add this item to your schedule | Genomics / Proteomics | Peredo, Elena L; Cardon, Zoe; Thomas, Suzanne; Bruce, Douglas. | desiccation tolerance
Transcriptomics
green algae
land colonization
photoprotection |
| 508 | Differences in population genetic structure of hawkmoth- and bee-pollinated species of Oenothera (Onagraceae)
Log in to add this item to your schedule | Genomics / Proteomics | Lewis, Emily Marie; Fant, Jeremie; Moore, Michael; Skogen, Krissa. | gene flow
pollination biology
fragmentation |
| 635 | Examination of the molecular genetic basis of andromonoecy in Aneilema (Commelinaceae)
Log in to add this item to your schedule | Genomics / Proteomics | Evans, Timothy; Weitzel, Alexander; Faden, Robert. | Aneilema
Commelinaceae
Transcriptome
differential expression |
| 898 | Functional and spatial heterogeneity of gene family evolution in non-model species: three strategies using Caryophyllales as an example
Log in to add this item to your schedule | Genomics / Proteomics | Yang, Ya; Moore, Michael; Brockington, Samuel; Smith, Stephen. | Transcriptome
genome
Caryophyllales
betalain |
| 242 | Gene expression and mycoheterotrophy: an exploratory analysis of green vs. non-green Corallorhiza (Orchidaceae)
Log in to add this item to your schedule | Genomics / Proteomics | Barrett, Craig; Perez, Leticia. | Transcriptome
mycoheterotroph
orchid
photosynthesis
parasite
RNAseq
gene expression |
| 177 | Genome-wide analysis of gene expression reveals gene regulatory networks that regulate chasmogamous and cleistogamous flowering in Pseudostellaria heterophylla (Caryophyllaceae)
Log in to add this item to your schedule | Genomics / Proteomics | Luo, Yan; Hu, Jin-Yong; Song, Bao-Hua. | RNA-seq
Transcriptome
cleistogamy
cleistogamous flowers
chasmogamous flowers
environmental response |
| 181 | Genome-wide association study of soybean cyst nematode (Heterodera glycines Ichinohe) HG type 2.5.7 (race 1) resistance in wild soybean (Glycine soja Sieb. & Zucc.)
Log in to add this item to your schedule | Genomics / Proteomics | Zhang, Heng-You; Song, Qijian; Luo, Yan; Nelson, Randall L.; Song, Bao-Hua. | Soybean cyst nematode
Genome-wide association study
Glycine soja
single nucleotide polymorphisms
resistance |
| 560 | Genome-wide Identification of the CNL Disease Resistance Genes in Barley (Hordeum vulgare L.) and Their Evolutinary Divergence
Log in to add this item to your schedule | Genomics / Proteomics | Andersen, Ethan J.; Nepal, Madhav P.; Ali, Shaukat; Yen, Yang; Reese, R. Neil; Neupane, Surendra. | Grass Phylogenetics
Disease Resistance GenesÂ
Coiled-coil Nucleotide-binding site
NBS-LRRs
gene duplication
Purifying Selection |
| 616 | Genomic Consequences of Reciprocal Polyploidization in Tragopogon
Log in to add this item to your schedule | Genomics / Proteomics | Shan, Shengchen; Soltis, Douglas; Soltis, Pamela S.. | polyploidy
Transcriptomics
Tragopogon miscellus
Reciprocal cross |
| 732 | Identifying diagnostic plastid polymorphisms for the non-fertile vetiver grass ‘Sunshine’ (Chrysopogon zizanioides)
Log in to add this item to your schedule | Genomics / Proteomics | Sigmon, Brandi; Adams, Robert; Mower, Jeffrey. | vetiver
Chrysopogon zizanioides
chloroplast
plastid
genome
polymorphism |
| 444 | Karyotypic Diversity and Pollen Viability in Resynthesized allopolyploids Tragopogon mirus and T. miscellus.
Log in to add this item to your schedule | Genomics / Proteomics | Spoelhof, Jonathan; Chester, Micahel; Rodriguez, Roseana; Geraci, Blake; Heo, Kweon; Mavrodiev, Evgeny; Soltis, Douglas E; Soltis, Pamela S.. | polyploidy
chromosomal rearrangement
Tragopogon
fertility |
| 334 | Lectins (haemagglutinins) from the Red Alga Acanthophora spicifera (vahl)Boergesen: Isolation, partial purification and characterization
Log in to add this item to your schedule | Genomics / Proteomics | Ravirajan, Mangaiyarkarasi; Natesanpayer, Nadimuthu. | Seaweeds
Acanthophora spicifera
Haemagglutinin
Lectin
Column Chromatography |
| 720 | Organ-specific transcriptomes of Oenothera harringtonii (Onagraceae) and associated variation in floral scent
Log in to add this item to your schedule | Genomics / Proteomics | Bechen, Lindsey; Overson, Rick; Johnson, Matthew; Fant, Jeremie; Levin, Rachel; Robert, Raguso; Skogen, Krissa; Wickett, Norm. | transcriptomes
differential expression
Genomics
gene expression
floral volatiles
pollination
RNA-seq
onagraceae |
| 230 | Patterns of cyto-nuclear disequilibrium and the influence of heteroplasmy in wild carrot, Daucus carota (Apiaceae)
Log in to add this item to your schedule | Genomics / Proteomics | Ramsey, Adam Joseph; Mandel, Jennifer R. | Genetic diversity
Genomes
Mitochondria
SNPs
SSRs
Paternal Leakage
plastid |
| 393 | Patterns of homoeologue usage within and among three Glycine allopolyploid species
Log in to add this item to your schedule | Genomics / Proteomics | Coate, Jeremy; Powell, Adrian; Koenig, Max; Doyle, Jeff. | polyploidy
Homoeologue-specific expression
RNA-seq
gene duplication
Gene loss |
| 463 | Sexual dimorphic expression patterns in the transcriptome of juvenile tissue of Ceratodon purpureus
Log in to add this item to your schedule | Genomics / Proteomics | Landis, Jacob Brian; Carey, Sarah B.; Payton, Adam C.; Woodruff, Emily D.; Conrad, Roth E.; Barry, Kerrie; Jenkins, Jerry; Grimwood, Jane; Schmutz, Jeremy; McDaniel, Stuart F.. | comparative transcriptome
RNAseq
de novo
Trinity
moss
sex-specific expression |
| 881 | Significant genetic structure and variation among domesticated Brassica rapa subspecies uncovered by transcriptomics
Log in to add this item to your schedule | Genomics / Proteomics | Qi, Xinshuai; An, Hong; Hall, Tara; Pires, Joseph Chris; Barker, Michael S. | domestication
Transcriptomics
phylogenomics
Phylogeography
polyploidy |
| 520 | Testing hypotheses on the repeated origination of polyploidy in plants
Log in to add this item to your schedule | Genomics / Proteomics | Witherup, Colby; Johnson, Matthew; Wickett, Norm. | polyploidy
meiosis |
| 443 | The Mitochondrial Genome of Eleusine indica
Log in to add this item to your schedule | Genomics / Proteomics | Hall, Nathan; Zhang, Hui; McElroy, J. Scott; Goertzen, Leslie. | Mitochondria
Eleusine indica
Poaceae |
| 694 | The origin and diversity of Brassica napus
Log in to add this item to your schedule | Genomics / Proteomics | An, Hong; Qi, Xinshuai; Barker, Michael S; Pires, Joseph Chris. | Brassica napus
genetic structure
RNA-seq
Allopolyploidy |
| 760 | The phylogenies and evolutionary history of the Portullugo Clade (Caryophyllales)
Log in to add this item to your schedule | Genomics / Proteomics | Moore, Abigail J; Hancock, Lillian Pine; De Vos, Jurriaan; Edwards, Erika. | Portulacineae
Caryophyllales
Portullugo
sequence capture
gene family evolution |
| 536 | The Story of Stresses: A look at transcriptomic variation of a single cultivated sunflower genotype across five abiotic stresses
Log in to add this item to your schedule | Genomics / Proteomics | Masalia, Rishi R.; Burke, John. | Transcriptomics
Abiotic Stress
Cultivated Sunflower
drought
Salt
differential expression
RNAseq |
| 178 | Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae)
Log in to add this item to your schedule | Genomics / Proteomics | Egan, Ashley N.; Vatanparast, Mohammad; Shetty, Prateek; Chopra, Ratan; Doyle, Jeff; Sathyanarayana, N.. | Fabaceae
Psophocarpus tetragonolobus
Transcriptomics
Roche 454 pyrosequencing
genetic resources |
| 219 | Tremendous Transfer – Intracellular Gene Transfer in the Basal Angiosperm Amborella trichopoda
Log in to add this item to your schedule | Genomics / Proteomics | Naumann, Julia; Wafula, Eric K.; Palmer, Jeffrey D.; dePamphilis, Claude W.. | Mitochondrial DNA
Plastid DNA
Nuclear Genome
Gene Transfer
Intracellular Gene Transfer
genome evolution |
| 704 | Weighted Gene Correlation Network Analysis of Morphine Biosynthesis in Opium Poppy (Papaver somniferum)
Log in to add this item to your schedule | Genomics / Proteomics | Lane, Amanda; Kerry, John; Augustin, Megan; Kutchan, Toni; Leebens-Mack, Jim. | Transcriptomics
Benzylisoquinoline Alkaloids
network analysis
RNAseq
Papaver somniferum |
