| ID | Title | Section/Topic | Authors | Keywords |
|---|
| 796 | A fruitful endeavor: Using RAD-seq to reveal the evolutionary relationships of the mango genus
Log in to add this item to your schedule | Phylogenomics | Warschefsky, Emily; von Wettberg, Eric. | phylogenomics
Anacardiaceae
RAD-seq
perennial crop
crop wild relative |
| 631 | A fully resolved phylogeny of the tropical Zingiberales using targeted gene enrichment
Log in to add this item to your schedule | Phylogenomics | Carlsen, Monica; Fer, Tomas; Kress, John. | target enrichment
Zingiberales
rapid diversification
Musaceae
phylogenomics
Heliconiaceae
Next generation sequencing |
| 202 | Analysis of whole chloroplast genomes from the genera of the Clauseneae, the Curry tribe (Rutaceae, Citrus family)
Log in to add this item to your schedule | Phylogenomics | Shivakumar, Vikram; Appelhans, Marc; Carlsen, Monica; Johnson, Gabriel; Zimmer, Elizabeth. | Rutaceae
Clauseneae
Bergera koenigii
Chloroplast Genome
Single nucleotide polymorphism
Next generation sequencing |
| 408 | A phylogenetic analysis of CYCLOIDEA throughout the subgenera of Rhododendron
Log in to add this item to your schedule | Phylogenomics | Deal, Haley; Soza, Valerie Lynn; Ramage, Elizabeth; Hall, Benjamin. | TCP genes
gene duplication
Ericaceae
floral symmetry |
| 749 | A phylogeny of the evening primrose family (Onagraceae) using a target enrichment approach for 322 nuclear loci
Log in to add this item to your schedule | Phylogenomics | Overson, Rick; Johnson, Matthew; Fant, Jeremie; Levin, Rachel; Moore, Michael; Wagner, Warren L.; Raguso, Robert A.; Skogen, Krissa; Wickett, Norm. | phylogenomics
evening primrose
RADseq
onagraceae
hyb-seq
HybPiper |
| 170 | A phylogeographic approach to assessing plastid genome evolution in a non-photosynthetic orchid using targeted sequence capture
Log in to add this item to your schedule | Phylogenomics | Barrett, Craig; Sass, Chodon. | Plastome
Next generation sequencing
phylogenomics
intraspecific variation
pseudogene
mycoheterotrophic
Orchidaceae
sequence capture
plastid
chloroplast
genome evolution |
| 410 | A pilot study applying the Plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae)
Log in to add this item to your schedule | Phylogenomics | Fragoso-Martínez, Itzi; Salazar, Gerardo A.; Martínez-Gordillo, Martha; Magallón, Susana; Lemmon, Alan R.; Moriarty Lemmon, Emily; Moreno-Letelier, Alejandra; Granados Mendoza, Carolina. | anchored phylogenomics
Lamiales
Lamiaceae
Salvia
Calosphace |
| 869 | A progress report: clarifying the evolutionary history of Leucaena (Leguminosae: Mimosoideae) using chloroplast, mitochondrial, and nuclear transcriptome data
Log in to add this item to your schedule | Phylogenomics | Bailey, C. Donovan; Kovar, Lynsey; Madhugiri, Nageswara-Rao; Dugas, Diana V.; Muhyi, Noor R.; Ortega-Rodriguez, Sealtiel; Koenen, Erik; Hughes, Colin E.. | |
| 557 | Assessing genealogical discordance within Adansonia (Malvaceae) by targeted-sequence capture
Log in to add this item to your schedule | Phylogenomics | Karimi, Nisa; Stenz, Noah; Grover, Corrinne; Joseph, Gallagher; Jonathan, Wendel; Baum, David. | |
| 723 | Circumscribing a core set of conserved, orthologous genes for moss phylogenetics
Log in to add this item to your schedule | Phylogenomics | Malley, Claire; Johnson, Matthew; Goffinet, Bernard; Shaw, A Jonathan; Wickett, Norm. | phylogenomics
transcriptomes
Mosses
Bryophytes
Bioinformatics |
| 220 | DNA sequences identify cryptic species of quillworts (Isoetes L.)
Log in to add this item to your schedule | Phylogenomics | Zimmer, Elizabeth; Taylor, W. Carl; Schafran, Peter; Johnson, Gabriel. | Isoetes
tetraploids
low-copy nuclear markers
Chloroplast Genome
Next generation sequencing |
| 411 | Enhanced phylogenetic resolution of the highly-diverse Neotropical genus Epidendrum (Orchidaceae) using Anchored Hybrid Enrichment
Log in to add this item to your schedule | Phylogenomics | Granados Mendoza, Carolina; Salazar, Gerardo A.; Hagsater, Eric; van der Berg, Cassio; Magallón, Susana; Moriarty Lemmon, Emily; Lemmon, Alan R.. | Epidendrum
Orchidaceae
anchored phylogenomics
Genomic Partitioning Strategies |
| 75 | Estimating species relationships within Pueraria s.s.: combining phylogenies and networks
Log in to add this item to your schedule | Phylogenomics | Mahadwar, Gouri; Hansen, Matthew S.; Egan, Ashley N.. | Pueraria
phylogeny
kudzu
taxonomy
hybridization
network analysis |
| 430 | Evaluating the impact of genomic data and priors on Bayesian estimates of the angiosperm evolutionary timescale
Log in to add this item to your schedule | Phylogenomics | Foster, Charles; Sauquet, Herve; van der Merwe, Marlien; McPherson, Hannah; Rossetto, Maurizio; Ho, Simon. | Angiospermae
chloroplast
genome
Molecular dating
Triassic
phylogenomics |
| 551 | Evolutionary Divergence of Disease Resistance Genes in Six Monocot Species
Log in to add this item to your schedule | Phylogenomics | Andersen, Ethan; Nepal, Madhav P.; Reese, R. Neil; Ali, Shaukat; Neupane, Surendra. | Disease Resistance GenesÂ
NBS-LRR
Purifying Selection
Durable ResistanceÂ
Monocot Genomes |
| 708 | Fast-Plast: Rapid de novo assembly and finishing for whole chloroplast genomes
Log in to add this item to your schedule | Phylogenomics | McKain, Michael; Wilson, Mark; Kellogg, Elizabeth Anne. | Chloroplast Genome
de novo assembly
automated |
| 761 | From phylotranscriptomics to anchored phylogenomics
Log in to add this item to your schedule | Phylogenomics | Leebens-Mack, Jim; Heyduk, Karolina; Comer, Jason; Eserman, Lauren; Harkess, Alex; McKain, Michael. | phylogenomics
sequence capture |
| 632 | Gene family evolution in the carnivorous clade of Caryophyllales
Log in to add this item to your schedule | Phylogenomics | Walker, Joseph; Yang, Ya; Moore, Michael; Brockington, Samuel; Smith, Stephen. | Transcriptome
phylogenomics |
| 861 | Genome-Guided Phylo-Transcriptomics
Log in to add this item to your schedule | Phylogenomics | Washburn, Jacob; Pires, Joseph Chris. | phylogenomics
Genomics
Transcriptomics |
| 55 | Genotyping by sequencing in a 'spiny' species complex of Australian arid zone grasses (Triodia)
Log in to add this item to your schedule | Phylogenomics | Anderson, Benjamin; Grierson, Pauline; Krauss, Siegfried; Thiele, Kevin; Barrett, Matthew. | ASTRAL
Australia
Genotyping by sequencing (GBS)
PyRAD
Species complex
Triodia |
| 757 | Grappling with gamma--a new look at an old WGD event
Log in to add this item to your schedule | Phylogenomics | Chanderbali, Andre; Berger, Brent; Howarth, Dianella; Soltis, Douglas; Soltis, Pamela S.. | angiosperms
gamma
WGD
phylogenomics |
| 639 | Grow a backbone: mitochondrial exome sequencing provides a surprisingly rich source of phylogenetically informative characters in the enigmatic Australian clade Goodenia s.l
Log in to add this item to your schedule | Phylogenomics | Michener, Pryce; Sessa, Emily Butler; Bush, Caroline; Shepherd, Kelly A.; Jabaily, Rachel Schmidt. | Australia
Asterales
Goodeniaceae
Next generation sequencing
genome skimming
Mitochondria |
| 324 | Hitting the century mark in an understudied, hyper-diverse lineage: Transcriptome-based phylogenomic analyses across the diatoms (Bacillariophyta)
Log in to add this item to your schedule | Phylogenomics | Parks, Matthew; Johnson, Matthew; Ruck, Elizabeth; Alverson, Andrew; Wickett, Norm. | diatom
phylogenomics
Transcriptome
orthology |
| 890 | Interrogating the phylogenomics of the Cleomaceae using transcriptomic data
Log in to add this item to your schedule | Phylogenomics | Dismukes, Wade; Edger, Patrick; Hall, Jocelyn C; Washburn, Jacob; Pires, Joseph Chris. | Transcriptomics
phylogenomics
polyploidy
paleopolyploidy
Brassicales |
| 403 | Intraspecific plastid genome variation and phylogenetic structure within the nickel hyperaccumulator Streptanthus polygaloides (Brassicaceae)
Log in to add this item to your schedule | Phylogenomics | Mincey, Katherine; Melton, Anthony; Hall, Nathan; Goertzen, Leslie; Boyd, Robert Steven. | hyperaccumulation
Serpentine
chloroplast
phylogenetics
Streptanthus polygaloides |
| 445 | Mitochondrial phylogenomics of mycoheterotrophic lineages of monocots
Log in to add this item to your schedule | Phylogenomics | Lin, Qianshi; Lam, Vivienne K. Y.; Gomez, Marybel Soto; Marques, Isabel; Merckx, Vincent; Graham, Sean W.. | mitochondrial genome
higher-order classification
mycoheterotrophic plants
mycoheterotrophy
Pandanales
Petrosaviales
Dioscoreales
Burmanniaceae
Thismiaceae |
| 636 | Molecules, morphology, and monophyly: revising the enigmatic Australian clade Goodenia s.l. (Goodeniaceae) using comprehensive sampling and big data
Log in to add this item to your schedule | Phylogenomics | Jabaily, Rachel Schmidt; Gardner, Andy; Sessa, Emily Butler; Michener, Pryce; Johnson, Eden; Shepherd, Kelly A.. | taxonomy
revision
Australia
Asterales
Goodeniaceae
genome skimming
chloroplast
Mitochondria |
| 332 | Multilocus phylogenetics of Pinus subsection Australes
Log in to add this item to your schedule | Phylogenomics | Gernandt, David S.; Aguirre, Xitlali; Vázquez Lobo, Alejandra; Willyard, Ann; Moreno, Alejandra; Jaramillo Correa, Juan Pablo; Piñero, Daniel; Liston, Aaron. | Coalescence
mtDNA
low-copy nuclear markers
pine
Plastome |
| 543 | Next-generation polyploid phylogenetics: Low-cost, high-throughput resolution of hybrid polyploid complexes using PacBio and PURC
Log in to add this item to your schedule | Phylogenomics | Rothfels, Carl; Pryer, Kathleen; Li, Fay-Wei. | Allopolyploidy
High-Throughput Sequencing
Next generation sequencing
reticulate evolution
Cystopteris
Gymnocarpium
Cystopteridaceae
ferns
low-copy nuclear markers
PacBio
species tree
chimeric sequences
phylogenetic networks |
| 114 | Phylogenetic relationships of Burmeistera (Campanulaceae)—using high-throughput sequencing to improve resolution in a recent radiation
Log in to add this item to your schedule | Phylogenomics | Uribe-Convers, Simon; Carlsen, Monica; Lagomarsino, Laura; Knox, Eric; Muchhala, Nathan C.. | phylogenomics
Plastome
Capture Probes
Chloroplast Genome
genome skimming
species tree
Coalescence
High-Throughput SequencingÂ
phylogenetics
Next generation sequencing
Campanulaceae
Burmeistera |
| 705 | Phylogenetics of the sweet potato complex: A comparison of RAD-seq and targeted gene capture for resolving relationships
Log in to add this item to your schedule | Phylogenomics | Eserman, Lauren; Leebens-Mack, Jim. | sweet potato
anchored phylogenomics
RADseq
morning glory
Species complex
Ipomoea |
| 866 | Phylogenetic study of the monocots using many single copy nuclear genes
Log in to add this item to your schedule | Phylogenomics | Timilsena, Prakash Raj; Wafula, Eric K.; Leebens-Mack, Jim; dePamphilis, Claude W.. | phylogenomics
monocots
Phylotranscriptomics
low-copy nuclear markers
phylogeny
Plants Tribe |
| 572 | Phylogenomics and adaptive trait evolution of ecologically dominant grasses
Log in to add this item to your schedule | Phylogenomics | McKain, Michael; McAllister, Chrissy; Biang, Kathrines; Clewel, Sarah; AuBuchon, Taylor; Saeidi, Saman; Welker, Cassiano; Art-han, Watchara; Pasquet, Remy; Traiperm, Paweena; Kellogg, Elizabeth Anne. | |
| 455 | Phylogenomics and transcriptomics of Galápagos daisy trees (Scalesia)
Log in to add this item to your schedule | Phylogenomics | Martin, Michael D.; Wales, Nathan; Madrigal, Jazmín R.; Hansen, Anders J.; Mundy, John; Petersen, Gitte; Seberg, Ole; Gilbert, M. Thomas P.. | Scalesia
phylogenetics
phylogenomics
Genomics
comparative genomics |
| 534 | Phylogenomics of Asarum subgenus Heterotropa section Hexastylis: serial derivations of similar floral forms spawned from two geographically-widespread species
Log in to add this item to your schedule | Phylogenomics | Sinn, Brandon T.; Daragan, Christina; Freudenstein, John V.. | Asarum
phylogenomics
Hexastylis |
| 821 | Phylogenomics of Temperate North American Milkweeds (Asclepias) based on 768 nuclear genes
Log in to add this item to your schedule | Phylogenomics | Straub, Shannon C.K.; Liston, Aaron; Weitemier, Kevin; McDonnell, Angela Jean; Fishbein, Mark. | hyb-seq
targeted sequencing
Asclepias
Apocynaceae
phylogenomics
species tree |
| 139 | Phylogenomics of the Phaseoloid legumes: an introduction
Log in to add this item to your schedule | Phylogenomics | Vatanparast, Mohammad; Powell, Adrian; Sherman-Broyles, Sue; Doyle, Jane; Doyle, Jeff; Egan, Ashley N.. | phylogenomics
legumes
Transcriptome
polyploidy
RNA-seq
Beans |
| 306 | Phylogenomics of the Ponderosa Pine Species Complex using High Throughput Sequencing
Log in to add this item to your schedule | Phylogenomics | Wills, Peter; Gernandt, David S.; Vasquez Lobo, Alejandra; Willyard, Ann. | low-copy nuclear markers
pine
species tree
Plastome |
| 620 | Phylogenomic study of Blue/White-Fruited Dogwoods (Cornus, Cornaceae) using GBS data
Log in to add this item to your schedule | Phylogenomics | Lindo, Julieta; Dong, Yibo; Obata, Shihori; Ji, Xiang; Xiang, Qiu-Yun (Jenny). | phylogenomics
Cornus
Genotyping by sequencing (GBS) |
| 623 | Phylogeny and evolution of Australian Calandrinia (Montiaceae): a CAM-evolving, succulent plant lineage from Australia, and the coolest plant radiation you’ve never heard of
Log in to add this item to your schedule | Phylogenomics | Hancock, Lillian Pine; Moore, Abigail; Holtum, Joseph; Edwards, Erika. | phylogenetics
CAM photosynthesis
Succulence
Montiaceae
Australia |
| 574 | Canceled Phylogeography of Nyssa sylvatica complex (Nyssaceae, Cornales) – Integrative evidence from GBS data and gene sequencing
Log in to add this item to your schedule | Phylogenomics | Xiang, Qiu-Yun (Jenny); Dong, Yibo; Douglas, Norman; Ji, Xiang; Obata, Shihori; Pais, Andrew; Peet, Robert. | Nyssa
Genotyping by sequencing (GBS)
Phylogeography
taxonomically complex group |
| 687 | Re-evaluation of subfamily relationships of Araceae using phylogenomics
Log in to add this item to your schedule | Phylogenomics | Zuluaga-Trochez, Alejandro; Moriarty Lemmon, Emily; Lemmon, Alan; Cameron, Ken. | Araceae
phylogenomics
target enrichment |
| 161 | Seeing the Protea for the (gene) trees: anchored phylogenomics resolves relationships in a rapid radiation
Log in to add this item to your schedule | Phylogenomics | Mitchell, Nora; Lewis, Paul; Lemmon, Emily; Lemmon, Alan R.; Holsinger, Kent. | anchored phylogenomics
Coalescence
phylogenetics
Proteaceae
radiation |
| 564 | Shape and scale in RAD-seq phylogenomics: Approaches for inferring trees for hundreds of taxa and millions of SNPs
Log in to add this item to your schedule | Phylogenomics | Robert Eaton, Deren Alexander; Park, Brian; Spriggs, Elizabeth L.; Donoghue, Michael. | Viburnum
RAD-seq
quartet
phylogenomics |
| 827 | Species tree estimation in Cucurbita provides new insight into the genetic diversity of multiple crop species and their wild relatives
Log in to add this item to your schedule | Phylogenomics | Kates, Heather Rose; Soltis, Pamela S.; Soltis, Douglas. | Cucurbits
crop wild relatives
species tree
crop evolution
microfluidic PCR-based target enrichment
low-copy nuclear markers |
| 281 | Targeted capture of putative single copy genes using next generation sequencing yields new insights into polyploid evolution of Ludwigia section Macrocarpon (Onagraceae)
Log in to add this item to your schedule | Phylogenomics | Liu, Shih-Hui; Chiang, Tzen-Yuh; Huang, Chao-Li; Hsu, Tsai-Wen; Chang, Chia-Hao; Raven, Peter H.; Hoch, Peter C.; Barber, Janet C.. | Ludwigia
Homoeologous
allopolyploidization |
| 599 | Canceled The evolutionary origins of the Rand Flora pattern in the Sweet Tabaiba (Euphorbia balsamifera): Hyb-Seq helps bridge the micro-macroevolutionary gap
Log in to add this item to your schedule | Phylogenomics | Pokorny, Lisa; Johnson, Matthew; Gardner, Elliot; Olsson, Sanna; Riina, Ricarda; Wickett, Norm; Sanmartín, Isabel. | Biogeography
Africa
phylogenomics
macroevolution
population genetics
hyb-seq
Euphorbia |
| 774 | The Natural History and Phylogeny of the Milkweed (Asclepias, Apocynaceae) Plastome
Log in to add this item to your schedule | Phylogenomics | Fishbein, Mark; Straub, Shannon C.K.; Hansen, Kimberley; Cronn, Richard C.; Liston, Aaron. | phylogenomics
data partition
model selection
signal |
| 109 | Using tRNA class informative features to determine the phylogenetic placement of Gnetophyta
Log in to add this item to your schedule | Phylogenomics | Lawrence, Travis Joseph; Ardell, David. | tRNA
Gnetophyta
phylogeny |
