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Smith, Stephen [1], Moore, Michael [2], Yang, Ya [3], Pease, James [4], Walker, Joseph [4].

Transcriptome analyses for non-model plants: phylogenomics and more.

Transcriptomic sequencing has become more common for non-model organisms as costs have lowered. Often, however, the full utility of these data are not realized because of barriers to data analysis. In this workshop, we will examine many different uses for transcriptomes including phylogenomic analyses, phyloGWAS, differential expression, and more. Workshop participants will be given the necessary scripts, instructions, and test data. No other special knowledge required. Instructions and dependencies to install will be handed out for participants to install and test before workshop. For those who are not familiar with command line interface, additional tutorial instructions will be provided.


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1 - University of Michigan, Ecology and Evolutionary Biology, 2071A Kraus Natural Science Building, Ann Arbor, MI, 48109, United States
2 - Oberlin College, 119 Woodland St., Science Center K111, Oberlin, OH, 44074, USA, 419-499-4171
3 - University Of Michigan, Ann Arbor, Ecology And Evolutionary Biology, 830 North University Ave., Ann Arbor, MI, 48109, USA
4 - University of Michigan, Ecology and Evolutionary Biology, 2071 Kraus Natural Science Building, Ann Arbor, MI, 48109

Keywords:
transcriptomes
phylogenomics
phyloGWAS
differential expression
phylogenetics
Genomics.

Presentation Type: Workshop
Session: WS12, Transcriptome analyses for non-model plants: phylogenomics and more
Location: 106/Savannah International Trade and Convention Center
Date: Sunday, July 31st, 2016
Time: 1:00 PM
Number: WS12001
Abstract ID:28
Candidate for Awards:None


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