ID | Title | Section/Topic | Authors | Keywords |
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796 | A fruitful endeavor: Using RAD-seq to reveal the evolutionary relationships of the mango genus Log in to add this item to your schedule | Phylogenomics | Warschefsky, Emily; von Wettberg, Eric. | phylogenomics Anacardiaceae RAD-seq perennial crop crop wild relative |
631 | A fully resolved phylogeny of the tropical Zingiberales using targeted gene enrichment Log in to add this item to your schedule | Phylogenomics | Carlsen, Monica; Fer, Tomas; Kress, John. | target enrichment Zingiberales rapid diversification Musaceae phylogenomics Heliconiaceae Next generation sequencing |
202 | Analysis of whole chloroplast genomes from the genera of the Clauseneae, the Curry tribe (Rutaceae, Citrus family) Log in to add this item to your schedule | Phylogenomics | Shivakumar, Vikram; Appelhans, Marc; Carlsen, Monica; Johnson, Gabriel; Zimmer, Elizabeth. | Rutaceae Clauseneae Bergera koenigii Chloroplast Genome Single nucleotide polymorphism Next generation sequencing |
408 | A phylogenetic analysis of CYCLOIDEA throughout the subgenera of Rhododendron Log in to add this item to your schedule | Phylogenomics | Deal, Haley; Soza, Valerie Lynn; Ramage, Elizabeth; Hall, Benjamin. | TCP genes gene duplication Ericaceae floral symmetry |
749 | A phylogeny of the evening primrose family (Onagraceae) using a target enrichment approach for 322 nuclear loci Log in to add this item to your schedule | Phylogenomics | Overson, Rick; Johnson, Matthew; Fant, Jeremie; Levin, Rachel; Moore, Michael; Wagner, Warren L.; Raguso, Robert A.; Skogen, Krissa; Wickett, Norm. | phylogenomics evening primrose RADseq onagraceae hyb-seq HybPiper |
170 | A phylogeographic approach to assessing plastid genome evolution in a non-photosynthetic orchid using targeted sequence capture Log in to add this item to your schedule | Phylogenomics | Barrett, Craig; Sass, Chodon. | Plastome Next generation sequencing phylogenomics intraspecific variation pseudogene mycoheterotrophic Orchidaceae sequence capture plastid chloroplast genome evolution |
410 | A pilot study applying the Plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae) Log in to add this item to your schedule | Phylogenomics | Fragoso-Martínez, Itzi; Salazar, Gerardo A.; Martínez-Gordillo, Martha; Magallón, Susana; Lemmon, Alan R.; Moriarty Lemmon, Emily; Moreno-Letelier, Alejandra; Granados Mendoza, Carolina. | anchored phylogenomics Lamiales Lamiaceae Salvia Calosphace |
869 | A progress report: clarifying the evolutionary history of Leucaena (Leguminosae: Mimosoideae) using chloroplast, mitochondrial, and nuclear transcriptome data Log in to add this item to your schedule | Phylogenomics | Bailey, C. Donovan; Kovar, Lynsey; Madhugiri, Nageswara-Rao; Dugas, Diana V.; Muhyi, Noor R.; Ortega-Rodriguez, Sealtiel; Koenen, Erik; Hughes, Colin E.. | |
557 | Assessing genealogical discordance within Adansonia (Malvaceae) by targeted-sequence capture Log in to add this item to your schedule | Phylogenomics | Karimi, Nisa; Stenz, Noah; Grover, Corrinne; Joseph, Gallagher; Jonathan, Wendel; Baum, David. | |
723 | Circumscribing a core set of conserved, orthologous genes for moss phylogenetics Log in to add this item to your schedule | Phylogenomics | Malley, Claire; Johnson, Matthew; Goffinet, Bernard; Shaw, A Jonathan; Wickett, Norm. | phylogenomics transcriptomes Mosses Bryophytes Bioinformatics |
220 | DNA sequences identify cryptic species of quillworts (Isoetes L.) Log in to add this item to your schedule | Phylogenomics | Zimmer, Elizabeth; Taylor, W. Carl; Schafran, Peter; Johnson, Gabriel. | Isoetes tetraploids low-copy nuclear markers Chloroplast Genome Next generation sequencing |
411 | Enhanced phylogenetic resolution of the highly-diverse Neotropical genus Epidendrum (Orchidaceae) using Anchored Hybrid Enrichment Log in to add this item to your schedule | Phylogenomics | Granados Mendoza, Carolina; Salazar, Gerardo A.; Hagsater, Eric; van der Berg, Cassio; Magallón, Susana; Moriarty Lemmon, Emily; Lemmon, Alan R.. | Epidendrum Orchidaceae anchored phylogenomics Genomic Partitioning Strategies |
75 | Estimating species relationships within Pueraria s.s.: combining phylogenies and networks Log in to add this item to your schedule | Phylogenomics | Mahadwar, Gouri; Hansen, Matthew S.; Egan, Ashley N.. | Pueraria phylogeny kudzu taxonomy hybridization network analysis |
430 | Evaluating the impact of genomic data and priors on Bayesian estimates of the angiosperm evolutionary timescale Log in to add this item to your schedule | Phylogenomics | Foster, Charles; Sauquet, Herve; van der Merwe, Marlien; McPherson, Hannah; Rossetto, Maurizio; Ho, Simon. | Angiospermae chloroplast genome Molecular dating Triassic phylogenomics |
551 | Evolutionary Divergence of Disease Resistance Genes in Six Monocot Species Log in to add this item to your schedule | Phylogenomics | Andersen, Ethan; Nepal, Madhav P.; Reese, R. Neil; Ali, Shaukat; Neupane, Surendra. | Disease Resistance Genes NBS-LRR Purifying Selection Durable Resistance Monocot Genomes |
708 | Fast-Plast: Rapid de novo assembly and finishing for whole chloroplast genomes Log in to add this item to your schedule | Phylogenomics | McKain, Michael; Wilson, Mark; Kellogg, Elizabeth Anne. | Chloroplast Genome de novo assembly automated |
761 | From phylotranscriptomics to anchored phylogenomics Log in to add this item to your schedule | Phylogenomics | Leebens-Mack, Jim; Heyduk, Karolina; Comer, Jason; Eserman, Lauren; Harkess, Alex; McKain, Michael. | phylogenomics sequence capture |
632 | Gene family evolution in the carnivorous clade of Caryophyllales Log in to add this item to your schedule | Phylogenomics | Walker, Joseph; Yang, Ya; Moore, Michael; Brockington, Samuel; Smith, Stephen. | Transcriptome phylogenomics |
861 | Genome-Guided Phylo-Transcriptomics Log in to add this item to your schedule | Phylogenomics | Washburn, Jacob; Pires, Joseph Chris. | phylogenomics Genomics Transcriptomics |
55 | Genotyping by sequencing in a 'spiny' species complex of Australian arid zone grasses (Triodia) Log in to add this item to your schedule | Phylogenomics | Anderson, Benjamin; Grierson, Pauline; Krauss, Siegfried; Thiele, Kevin; Barrett, Matthew. | ASTRAL Australia Genotyping by sequencing (GBS) PyRAD Species complex Triodia |
757 | Grappling with gamma--a new look at an old WGD event Log in to add this item to your schedule | Phylogenomics | Chanderbali, Andre; Berger, Brent; Howarth, Dianella; Soltis, Douglas; Soltis, Pamela S.. | angiosperms gamma WGD phylogenomics |
639 | Grow a backbone: mitochondrial exome sequencing provides a surprisingly rich source of phylogenetically informative characters in the enigmatic Australian clade Goodenia s.l Log in to add this item to your schedule | Phylogenomics | Michener, Pryce; Sessa, Emily Butler; Bush, Caroline; Shepherd, Kelly A.; Jabaily, Rachel Schmidt. | Australia Asterales Goodeniaceae Next generation sequencing genome skimming Mitochondria |
324 | Hitting the century mark in an understudied, hyper-diverse lineage: Transcriptome-based phylogenomic analyses across the diatoms (Bacillariophyta) Log in to add this item to your schedule | Phylogenomics | Parks, Matthew; Johnson, Matthew; Ruck, Elizabeth; Alverson, Andrew; Wickett, Norm. | diatom phylogenomics Transcriptome orthology |
890 | Interrogating the phylogenomics of the Cleomaceae using transcriptomic data Log in to add this item to your schedule | Phylogenomics | Dismukes, Wade; Edger, Patrick; Hall, Jocelyn C; Washburn, Jacob; Pires, Joseph Chris. | Transcriptomics phylogenomics polyploidy paleopolyploidy Brassicales |
403 | Intraspecific plastid genome variation and phylogenetic structure within the nickel hyperaccumulator Streptanthus polygaloides (Brassicaceae) Log in to add this item to your schedule | Phylogenomics | Mincey, Katherine; Melton, Anthony; Hall, Nathan; Goertzen, Leslie; Boyd, Robert Steven. | hyperaccumulation Serpentine chloroplast phylogenetics Streptanthus polygaloides |
445 | Mitochondrial phylogenomics of mycoheterotrophic lineages of monocots Log in to add this item to your schedule | Phylogenomics | Lin, Qianshi; Lam, Vivienne K. Y.; Gomez, Marybel Soto; Marques, Isabel; Merckx, Vincent; Graham, Sean W.. | mitochondrial genome higher-order classification mycoheterotrophic plants mycoheterotrophy Pandanales Petrosaviales Dioscoreales Burmanniaceae Thismiaceae |
636 | Molecules, morphology, and monophyly: revising the enigmatic Australian clade Goodenia s.l. (Goodeniaceae) using comprehensive sampling and big data Log in to add this item to your schedule | Phylogenomics | Jabaily, Rachel Schmidt; Gardner, Andy; Sessa, Emily Butler; Michener, Pryce; Johnson, Eden; Shepherd, Kelly A.. | taxonomy revision Australia Asterales Goodeniaceae genome skimming chloroplast Mitochondria |
332 | Multilocus phylogenetics of Pinus subsection Australes Log in to add this item to your schedule | Phylogenomics | Gernandt, David S.; Aguirre, Xitlali; Vázquez Lobo, Alejandra; Willyard, Ann; Moreno, Alejandra; Jaramillo Correa, Juan Pablo; Piñero, Daniel; Liston, Aaron. | Coalescence mtDNA low-copy nuclear markers pine Plastome |
543 | Next-generation polyploid phylogenetics: Low-cost, high-throughput resolution of hybrid polyploid complexes using PacBio and PURC Log in to add this item to your schedule | Phylogenomics | Rothfels, Carl; Pryer, Kathleen; Li, Fay-Wei. | Allopolyploidy High-Throughput Sequencing Next generation sequencing reticulate evolution Cystopteris Gymnocarpium Cystopteridaceae ferns low-copy nuclear markers PacBio species tree chimeric sequences phylogenetic networks |
114 | Phylogenetic relationships of Burmeistera (Campanulaceae)—using high-throughput sequencing to improve resolution in a recent radiation Log in to add this item to your schedule | Phylogenomics | Uribe-Convers, Simon; Carlsen, Monica; Lagomarsino, Laura; Knox, Eric; Muchhala, Nathan C.. | phylogenomics Plastome Capture Probes Chloroplast Genome genome skimming species tree Coalescence High-Throughput Sequencing phylogenetics Next generation sequencing Campanulaceae Burmeistera |
705 | Phylogenetics of the sweet potato complex: A comparison of RAD-seq and targeted gene capture for resolving relationships Log in to add this item to your schedule | Phylogenomics | Eserman, Lauren; Leebens-Mack, Jim. | sweet potato anchored phylogenomics RADseq morning glory Species complex Ipomoea |
866 | Phylogenetic study of the monocots using many single copy nuclear genes Log in to add this item to your schedule | Phylogenomics | Timilsena, Prakash Raj; Wafula, Eric K.; Leebens-Mack, Jim; dePamphilis, Claude W.. | phylogenomics monocots Phylotranscriptomics low-copy nuclear markers phylogeny Plants Tribe |
572 | Phylogenomics and adaptive trait evolution of ecologically dominant grasses Log in to add this item to your schedule | Phylogenomics | McKain, Michael; McAllister, Chrissy; Biang, Kathrines; Clewel, Sarah; AuBuchon, Taylor; Saeidi, Saman; Welker, Cassiano; Art-han, Watchara; Pasquet, Remy; Traiperm, Paweena; Kellogg, Elizabeth Anne. | |
455 | Phylogenomics and transcriptomics of Galápagos daisy trees (Scalesia) Log in to add this item to your schedule | Phylogenomics | Martin, Michael D.; Wales, Nathan; Madrigal, Jazmín R.; Hansen, Anders J.; Mundy, John; Petersen, Gitte; Seberg, Ole; Gilbert, M. Thomas P.. | Scalesia phylogenetics phylogenomics Genomics comparative genomics |
534 | Phylogenomics of Asarum subgenus Heterotropa section Hexastylis: serial derivations of similar floral forms spawned from two geographically-widespread species Log in to add this item to your schedule | Phylogenomics | Sinn, Brandon T.; Daragan, Christina; Freudenstein, John V.. | Asarum phylogenomics Hexastylis |
821 | Phylogenomics of Temperate North American Milkweeds (Asclepias) based on 768 nuclear genes Log in to add this item to your schedule | Phylogenomics | Straub, Shannon C.K.; Liston, Aaron; Weitemier, Kevin; McDonnell, Angela Jean; Fishbein, Mark. | hyb-seq targeted sequencing Asclepias Apocynaceae phylogenomics species tree |
139 | Phylogenomics of the Phaseoloid legumes: an introduction Log in to add this item to your schedule | Phylogenomics | Vatanparast, Mohammad; Powell, Adrian; Sherman-Broyles, Sue; Doyle, Jane; Doyle, Jeff; Egan, Ashley N.. | phylogenomics legumes Transcriptome polyploidy RNA-seq Beans |
306 | Phylogenomics of the Ponderosa Pine Species Complex using High Throughput Sequencing Log in to add this item to your schedule | Phylogenomics | Wills, Peter; Gernandt, David S.; Vasquez Lobo, Alejandra; Willyard, Ann. | low-copy nuclear markers pine species tree Plastome |
620 | Phylogenomic study of Blue/White-Fruited Dogwoods (Cornus, Cornaceae) using GBS data Log in to add this item to your schedule | Phylogenomics | Lindo, Julieta; Dong, Yibo; Obata, Shihori; Ji, Xiang; Xiang, Qiu-Yun (Jenny). | phylogenomics Cornus Genotyping by sequencing (GBS) |
623 | Phylogeny and evolution of Australian Calandrinia (Montiaceae): a CAM-evolving, succulent plant lineage from Australia, and the coolest plant radiation you’ve never heard of Log in to add this item to your schedule | Phylogenomics | Hancock, Lillian Pine; Moore, Abigail; Holtum, Joseph; Edwards, Erika. | phylogenetics CAM photosynthesis Succulence Montiaceae Australia |
574 | Canceled Phylogeography of Nyssa sylvatica complex (Nyssaceae, Cornales) – Integrative evidence from GBS data and gene sequencing Log in to add this item to your schedule | Phylogenomics | Xiang, Qiu-Yun (Jenny); Dong, Yibo; Douglas, Norman; Ji, Xiang; Obata, Shihori; Pais, Andrew; Peet, Robert. | Nyssa Genotyping by sequencing (GBS) Phylogeography taxonomically complex group |
687 | Re-evaluation of subfamily relationships of Araceae using phylogenomics Log in to add this item to your schedule | Phylogenomics | Zuluaga-Trochez, Alejandro; Moriarty Lemmon, Emily; Lemmon, Alan; Cameron, Ken. | Araceae phylogenomics target enrichment |
161 | Seeing the Protea for the (gene) trees: anchored phylogenomics resolves relationships in a rapid radiation Log in to add this item to your schedule | Phylogenomics | Mitchell, Nora; Lewis, Paul; Lemmon, Emily; Lemmon, Alan R.; Holsinger, Kent. | anchored phylogenomics Coalescence phylogenetics Proteaceae radiation |
564 | Shape and scale in RAD-seq phylogenomics: Approaches for inferring trees for hundreds of taxa and millions of SNPs Log in to add this item to your schedule | Phylogenomics | Robert Eaton, Deren Alexander; Park, Brian; Spriggs, Elizabeth L.; Donoghue, Michael. | Viburnum RAD-seq quartet phylogenomics |
827 | Species tree estimation in Cucurbita provides new insight into the genetic diversity of multiple crop species and their wild relatives Log in to add this item to your schedule | Phylogenomics | Kates, Heather Rose; Soltis, Pamela S.; Soltis, Douglas. | Cucurbits crop wild relatives species tree crop evolution microfluidic PCR-based target enrichment low-copy nuclear markers |
281 | Targeted capture of putative single copy genes using next generation sequencing yields new insights into polyploid evolution of Ludwigia section Macrocarpon (Onagraceae) Log in to add this item to your schedule | Phylogenomics | Liu, Shih-Hui; Chiang, Tzen-Yuh; Huang, Chao-Li; Hsu, Tsai-Wen; Chang, Chia-Hao; Raven, Peter H.; Hoch, Peter C.; Barber, Janet C.. | Ludwigia Homoeologous allopolyploidization |
599 | Canceled The evolutionary origins of the Rand Flora pattern in the Sweet Tabaiba (Euphorbia balsamifera): Hyb-Seq helps bridge the micro-macroevolutionary gap Log in to add this item to your schedule | Phylogenomics | Pokorny, Lisa; Johnson, Matthew; Gardner, Elliot; Olsson, Sanna; Riina, Ricarda; Wickett, Norm; Sanmartín, Isabel. | Biogeography Africa phylogenomics macroevolution population genetics hyb-seq Euphorbia |
774 | The Natural History and Phylogeny of the Milkweed (Asclepias, Apocynaceae) Plastome Log in to add this item to your schedule | Phylogenomics | Fishbein, Mark; Straub, Shannon C.K.; Hansen, Kimberley; Cronn, Richard C.; Liston, Aaron. | phylogenomics data partition model selection signal |
109 | Using tRNA class informative features to determine the phylogenetic placement of Gnetophyta Log in to add this item to your schedule | Phylogenomics | Lawrence, Travis Joseph; Ardell, David. | tRNA Gnetophyta phylogeny |