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| Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, August 1st |
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| 1001 | August 1st 8:00 am | 101/Savannah International Trade and Convention Center | Genotyping by sequencing in a 'spiny' species complex of Australian arid zone grasses (Triodia)
Log in to add this item to your schedule | Oral Paper | Anderson, Benjamin; Grierson, Pauline; Krauss, Siegfried; Thiele, Kevin; Barrett, Matthew. | ASTRAL
Australia
Genotyping by sequencing (GBS)
PyRAD
Species complex
Triodia |
| 1002 | August 1st 8:15 am | 101/Savannah International Trade and Convention Center | Phylogenetic relationships of Burmeistera (Campanulaceae)—using high-throughput sequencing to improve resolution in a recent radiation
Log in to add this item to your schedule | Oral Paper | Uribe-Convers, Simon; Carlsen, Monica; Lagomarsino, Laura; Knox, Eric; Muchhala, Nathan C.. | phylogenomics
Plastome
Capture Probes
Chloroplast Genome
genome skimming
species tree
Coalescence
High-Throughput SequencingÂ
phylogenetics
Next generation sequencing
Campanulaceae
Burmeistera |
| 1003 | August 1st 8:30 am | 101/Savannah International Trade and Convention Center | Phylogenomics of the Phaseoloid legumes: an introduction
Log in to add this item to your schedule | Oral Paper | Vatanparast, Mohammad; Powell, Adrian; Sherman-Broyles, Sue; Doyle, Jane; Doyle, Jeff; Egan, Ashley N.. | phylogenomics
legumes
Transcriptome
polyploidy
RNA-seq
Beans |
| 1004 | August 1st 8:45 am | 101/Savannah International Trade and Convention Center | Seeing the Protea for the (gene) trees: anchored phylogenomics resolves relationships in a rapid radiation
Log in to add this item to your schedule | Oral Paper | Mitchell, Nora; Lewis, Paul; Lemmon, Emily; Lemmon, Alan R.; Holsinger, Kent. | anchored phylogenomics
Coalescence
phylogenetics
Proteaceae
radiation |
| 1005 | August 1st 9:00 am | 101/Savannah International Trade and Convention Center | A phylogeographic approach to assessing plastid genome evolution in a non-photosynthetic orchid using targeted sequence capture
Log in to add this item to your schedule | Oral Paper | Barrett, Craig; Sass, Chodon. | Plastome
Next generation sequencing
phylogenomics
intraspecific variation
pseudogene
mycoheterotrophic
Orchidaceae
sequence capture
plastid
chloroplast
genome evolution |
| 1006 | August 1st 9:15 am | 101/Savannah International Trade and Convention Center | DNA sequences identify cryptic species of quillworts (Isoetes L.)
Log in to add this item to your schedule | Oral Paper | Zimmer, Elizabeth; Taylor, W. Carl; Schafran, Peter; Johnson, Gabriel. | Isoetes
tetraploids
low-copy nuclear markers
Chloroplast Genome
Next generation sequencing |
| 1007 | August 1st 9:30 am | 101/Savannah International Trade and Convention Center | Hitting the century mark in an understudied, hyper-diverse lineage: Transcriptome-based phylogenomic analyses across the diatoms (Bacillariophyta)
Log in to add this item to your schedule | Oral Paper | Parks, Matthew; Johnson, Matthew; Ruck, Elizabeth; Alverson, Andrew; Wickett, Norm. | diatom
phylogenomics
Transcriptome
orthology |
| August 1st 9:45 am | 101/Savannah International Trade and Convention Center | Break
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| 1009 | August 1st 10:15 am | 101/Savannah International Trade and Convention Center | Multilocus phylogenetics of Pinus subsection Australes
Log in to add this item to your schedule | Oral Paper | Gernandt, David S.; Aguirre, Xitlali; Vázquez Lobo, Alejandra; Willyard, Ann; Moreno, Alejandra; Jaramillo Correa, Juan Pablo; Piñero, Daniel; Liston, Aaron. | Coalescence
mtDNA
low-copy nuclear markers
pine
Plastome |
| 1010 | August 1st 10:30 am | 101/Savannah International Trade and Convention Center | A pilot study applying the Plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae)
Log in to add this item to your schedule | Oral Paper | Fragoso-Martínez, Itzi; Salazar, Gerardo A.; Martínez-Gordillo, Martha; Magallón, Susana; Lemmon, Alan R.; Moriarty Lemmon, Emily; Moreno-Letelier, Alejandra; Granados Mendoza, Carolina. | anchored phylogenomics
Lamiales
Lamiaceae
Salvia
Calosphace |
| 1011 | August 1st 10:45 am | 101/Savannah International Trade and Convention Center | Enhanced phylogenetic resolution of the highly-diverse Neotropical genus Epidendrum (Orchidaceae) using Anchored Hybrid Enrichment
Log in to add this item to your schedule | Oral Paper | Granados Mendoza, Carolina; Salazar, Gerardo A.; Hagsater, Eric; van der Berg, Cassio; Magallón, Susana; Moriarty Lemmon, Emily; Lemmon, Alan R.. | Epidendrum
Orchidaceae
anchored phylogenomics
Genomic Partitioning Strategies |
| 1012 | August 1st 11:00 am | 101/Savannah International Trade and Convention Center | Evaluating the impact of genomic data and priors on Bayesian estimates of the angiosperm evolutionary timescale
Log in to add this item to your schedule | Oral Paper | Foster, Charles; Sauquet, Herve; van der Merwe, Marlien; McPherson, Hannah; Rossetto, Maurizio; Ho, Simon. | Angiospermae
chloroplast
genome
Molecular dating
Triassic
phylogenomics |
| 1013 | August 1st 11:15 am | 101/Savannah International Trade and Convention Center | Mitochondrial phylogenomics of mycoheterotrophic lineages of monocots
Log in to add this item to your schedule | Oral Paper | Lin, Qianshi; Lam, Vivienne K. Y.; Gomez, Marybel Soto; Marques, Isabel; Merckx, Vincent; Graham, Sean W.. | mitochondrial genome
higher-order classification
mycoheterotrophic plants
mycoheterotrophy
Pandanales
Petrosaviales
Dioscoreales
Burmanniaceae
Thismiaceae |
| 1014 | August 1st 11:30 am | 101/Savannah International Trade and Convention Center | Phylogenomics and transcriptomics of Galápagos daisy trees (Scalesia)
Log in to add this item to your schedule | Oral Paper | Martin, Michael D.; Wales, Nathan; Madrigal, Jazmín R.; Hansen, Anders J.; Mundy, John; Petersen, Gitte; Seberg, Ole; Gilbert, M. Thomas P.. | Scalesia
phylogenetics
phylogenomics
Genomics
comparative genomics |
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| PPY001 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Estimating species relationships within Pueraria s.s.: combining phylogenies and networks
Log in to add this item to your schedule | Poster: Phylogenomics | Mahadwar, Gouri; Hansen, Matthew S.; Egan, Ashley N.. | Pueraria
phylogeny
kudzu
taxonomy
hybridization
network analysis |
| PPY002 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Using tRNA class informative features to determine the phylogenetic placement of Gnetophyta
Log in to add this item to your schedule | Poster: Phylogenomics | Lawrence, Travis Joseph; Ardell, David. | tRNA
Gnetophyta
phylogeny |
| PPY003 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Analysis of whole chloroplast genomes from the genera of the Clauseneae, the Curry tribe (Rutaceae, Citrus family)
Log in to add this item to your schedule | Poster: Phylogenomics | Shivakumar, Vikram; Appelhans, Marc; Carlsen, Monica; Johnson, Gabriel; Zimmer, Elizabeth. | Rutaceae
Clauseneae
Bergera koenigii
Chloroplast Genome
Single nucleotide polymorphism
Next generation sequencing |
| PPY004 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Targeted capture of putative single copy genes using next generation sequencing yields new insights into polyploid evolution of Ludwigia section Macrocarpon (Onagraceae)
Log in to add this item to your schedule | Poster: Phylogenomics | Liu, Shih-Hui; Chiang, Tzen-Yuh; Huang, Chao-Li; Hsu, Tsai-Wen; Chang, Chia-Hao; Raven, Peter H.; Hoch, Peter C.; Barber, Janet C.. | Ludwigia
Homoeologous
allopolyploidization |
| PPY005 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Phylogenomics of the Ponderosa Pine Species Complex using High Throughput Sequencing
Log in to add this item to your schedule | Poster: Phylogenomics | Wills, Peter; Gernandt, David S.; Vasquez Lobo, Alejandra; Willyard, Ann. | low-copy nuclear markers
pine
species tree
Plastome |
| PPY006 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Intraspecific plastid genome variation and phylogenetic structure within the nickel hyperaccumulator Streptanthus polygaloides (Brassicaceae)
Log in to add this item to your schedule | Poster: Phylogenomics | Mincey, Katherine; Melton, Anthony; Hall, Nathan; Goertzen, Leslie; Boyd, Robert Steven. | hyperaccumulation
Serpentine
chloroplast
phylogenetics
Streptanthus polygaloides |
| PPY007 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | A phylogenetic analysis of CYCLOIDEA throughout the subgenera of Rhododendron
Log in to add this item to your schedule | Poster: Phylogenomics | Deal, Haley; Soza, Valerie Lynn; Ramage, Elizabeth; Hall, Benjamin. | TCP genes
gene duplication
Ericaceae
floral symmetry |
| PPY008 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Evolutionary Divergence of Disease Resistance Genes in Six Monocot Species
Log in to add this item to your schedule | Poster: Phylogenomics | Andersen, Ethan; Nepal, Madhav P.; Reese, R. Neil; Ali, Shaukat; Neupane, Surendra. | Disease Resistance GenesÂ
NBS-LRR
Purifying Selection
Durable ResistanceÂ
Monocot Genomes |
| PPY009 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Fast-Plast: Rapid de novo assembly and finishing for whole chloroplast genomes
Log in to add this item to your schedule | Poster: Phylogenomics | McKain, Michael; Wilson, Mark; Kellogg, Elizabeth Anne. | Chloroplast Genome
de novo assembly
automated |
| PPY010 | August 1st 5:30 pm | Exhibit Hall/Savannah International Trade and Convention Center | Interrogating the phylogenomics of the Cleomaceae using transcriptomic data
Log in to add this item to your schedule | Poster: Phylogenomics | Dismukes, Wade; Edger, Patrick; Hall, Jocelyn C; Washburn, Jacob; Pires, Joseph Chris. | Transcriptomics
phylogenomics
polyploidy
paleopolyploidy
Brassicales |
Tuesday, August 2nd |
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| 16001 | August 2nd 8:00 am | 202/Savannah International Trade and Convention Center | Phylogenomics of Asarum subgenus Heterotropa section Hexastylis: serial derivations of similar floral forms spawned from two geographically-widespread species
Log in to add this item to your schedule | Oral Paper | Sinn, Brandon T.; Daragan, Christina; Freudenstein, John V.. | Asarum
phylogenomics
Hexastylis |
| 16002 | August 2nd 8:15 am | 202/Savannah International Trade and Convention Center | Next-generation polyploid phylogenetics: Low-cost, high-throughput resolution of hybrid polyploid complexes using PacBio and PURC
Log in to add this item to your schedule | Oral Paper | Rothfels, Carl; Pryer, Kathleen; Li, Fay-Wei. | Allopolyploidy
High-Throughput Sequencing
Next generation sequencing
reticulate evolution
Cystopteris
Gymnocarpium
Cystopteridaceae
ferns
low-copy nuclear markers
PacBio
species tree
chimeric sequences
phylogenetic networks |
| 16003 | August 2nd 8:30 am | 202/Savannah International Trade and Convention Center | Assessing genealogical discordance within Adansonia (Malvaceae) by targeted-sequence capture
Log in to add this item to your schedule | Oral Paper | Karimi, Nisa; Stenz, Noah; Grover, Corrinne; Joseph, Gallagher; Jonathan, Wendel; Baum, David. | |
| 16004 | August 2nd 8:45 am | 202/Savannah International Trade and Convention Center | Phylogenomics and adaptive trait evolution of ecologically dominant grasses
Log in to add this item to your schedule | Oral Paper | McKain, Michael; McAllister, Chrissy; Biang, Kathrines; Clewel, Sarah; AuBuchon, Taylor; Saeidi, Saman; Welker, Cassiano; Art-han, Watchara; Pasquet, Remy; Traiperm, Paweena; Kellogg, Elizabeth Anne. | |
| 16005 | August 2nd 9:00 am | 202/Savannah International Trade and Convention Center | Shape and scale in RAD-seq phylogenomics: Approaches for inferring trees for hundreds of taxa and millions of SNPs
Log in to add this item to your schedule | Oral Paper | Robert Eaton, Deren Alexander; Park, Brian; Spriggs, Elizabeth L.; Donoghue, Michael. | Viburnum
RAD-seq
quartet
phylogenomics |
| 16006 | August 2nd 9:15 am | 202/Savannah International Trade and Convention Center | Canceled Phylogeography of Nyssa sylvatica complex (Nyssaceae, Cornales) – Integrative evidence from GBS data and gene sequencing
Log in to add this item to your schedule | Oral Paper | Xiang, Qiu-Yun (Jenny); Dong, Yibo; Douglas, Norman; Ji, Xiang; Obata, Shihori; Pais, Andrew; Peet, Robert. | Nyssa
Genotyping by sequencing (GBS)
Phylogeography
taxonomically complex group |
| August 2nd 9:30 am | 202/Savannah International Trade and Convention Center | Break
Log in to add this item to your schedule | | | |
| 16008 | August 2nd 10:00 am | 202/Savannah International Trade and Convention Center | Canceled The evolutionary origins of the Rand Flora pattern in the Sweet Tabaiba (Euphorbia balsamifera): Hyb-Seq helps bridge the micro-macroevolutionary gap
Log in to add this item to your schedule | Oral Paper | Pokorny, Lisa; Johnson, Matthew; Gardner, Elliot; Olsson, Sanna; Riina, Ricarda; Wickett, Norm; Sanmartín, Isabel. | Biogeography
Africa
phylogenomics
macroevolution
population genetics
hyb-seq
Euphorbia |
| 16009 | August 2nd 10:15 am | 202/Savannah International Trade and Convention Center | Phylogenomic study of Blue/White-Fruited Dogwoods (Cornus, Cornaceae) using GBS data
Log in to add this item to your schedule | Oral Paper | Lindo, Julieta; Dong, Yibo; Obata, Shihori; Ji, Xiang; Xiang, Qiu-Yun (Jenny). | phylogenomics
Cornus
Genotyping by sequencing (GBS) |
| 16010 | August 2nd 10:30 am | 202/Savannah International Trade and Convention Center | Phylogeny and evolution of Australian Calandrinia (Montiaceae): a CAM-evolving, succulent plant lineage from Australia, and the coolest plant radiation you’ve never heard of
Log in to add this item to your schedule | Oral Paper | Hancock, Lillian Pine; Moore, Abigail; Holtum, Joseph; Edwards, Erika. | phylogenetics
CAM photosynthesis
Succulence
Montiaceae
Australia |
| 16011 | August 2nd 10:45 am | 202/Savannah International Trade and Convention Center | A fully resolved phylogeny of the tropical Zingiberales using targeted gene enrichment
Log in to add this item to your schedule | Oral Paper | Carlsen, Monica; Fer, Tomas; Kress, John. | target enrichment
Zingiberales
rapid diversification
Musaceae
phylogenomics
Heliconiaceae
Next generation sequencing |
| 16012 | August 2nd 11:00 am | 202/Savannah International Trade and Convention Center | Gene family evolution in the carnivorous clade of Caryophyllales
Log in to add this item to your schedule | Oral Paper | Walker, Joseph; Yang, Ya; Moore, Michael; Brockington, Samuel; Smith, Stephen. | Transcriptome
phylogenomics |
| 16013 | August 2nd 11:15 am | 202/Savannah International Trade and Convention Center | Molecules, morphology, and monophyly: revising the enigmatic Australian clade Goodenia s.l. (Goodeniaceae) using comprehensive sampling and big data
Log in to add this item to your schedule | Oral Paper | Jabaily, Rachel Schmidt; Gardner, Andy; Sessa, Emily Butler; Michener, Pryce; Johnson, Eden; Shepherd, Kelly A.. | taxonomy
revision
Australia
Asterales
Goodeniaceae
genome skimming
chloroplast
Mitochondria |
Wednesday, August 3rd |
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| 38001 | August 3rd 8:00 am | 204/Savannah International Trade and Convention Center | Grow a backbone: mitochondrial exome sequencing provides a surprisingly rich source of phylogenetically informative characters in the enigmatic Australian clade Goodenia s.l
Log in to add this item to your schedule | Oral Paper | Michener, Pryce; Sessa, Emily Butler; Bush, Caroline; Shepherd, Kelly A.; Jabaily, Rachel Schmidt. | Australia
Asterales
Goodeniaceae
Next generation sequencing
genome skimming
Mitochondria |
| 38002 | August 3rd 8:15 am | 204/Savannah International Trade and Convention Center | Re-evaluation of subfamily relationships of Araceae using phylogenomics
Log in to add this item to your schedule | Oral Paper | Zuluaga-Trochez, Alejandro; Moriarty Lemmon, Emily; Lemmon, Alan; Cameron, Ken. | Araceae
phylogenomics
target enrichment |
| 38003 | August 3rd 8:30 am | 204/Savannah International Trade and Convention Center | Phylogenetics of the sweet potato complex: A comparison of RAD-seq and targeted gene capture for resolving relationships
Log in to add this item to your schedule | Oral Paper | Eserman, Lauren; Leebens-Mack, Jim. | sweet potato
anchored phylogenomics
RADseq
morning glory
Species complex
Ipomoea |
| 38004 | August 3rd 8:45 am | 204/Savannah International Trade and Convention Center | Circumscribing a core set of conserved, orthologous genes for moss phylogenetics
Log in to add this item to your schedule | Oral Paper | Malley, Claire; Johnson, Matthew; Goffinet, Bernard; Shaw, A Jonathan; Wickett, Norm. | phylogenomics
transcriptomes
Mosses
Bryophytes
Bioinformatics |
| 38005 | August 3rd 9:00 am | 204/Savannah International Trade and Convention Center | A phylogeny of the evening primrose family (Onagraceae) using a target enrichment approach for 322 nuclear loci
Log in to add this item to your schedule | Oral Paper | Overson, Rick; Johnson, Matthew; Fant, Jeremie; Levin, Rachel; Moore, Michael; Wagner, Warren L.; Raguso, Robert A.; Skogen, Krissa; Wickett, Norm. | phylogenomics
evening primrose
RADseq
onagraceae
hyb-seq
HybPiper |
| 38006 | August 3rd 9:15 am | 204/Savannah International Trade and Convention Center | Grappling with gamma--a new look at an old WGD event
Log in to add this item to your schedule | Oral Paper | Chanderbali, Andre; Berger, Brent; Howarth, Dianella; Soltis, Douglas; Soltis, Pamela S.. | angiosperms
gamma
WGD
phylogenomics |
| 38007 | August 3rd 9:30 am | 204/Savannah International Trade and Convention Center | The Natural History and Phylogeny of the Milkweed (Asclepias, Apocynaceae) Plastome
Log in to add this item to your schedule | Oral Paper | Fishbein, Mark; Straub, Shannon C.K.; Hansen, Kimberley; Cronn, Richard C.; Liston, Aaron. | phylogenomics
data partition
model selection
signal |
| August 3rd 9:45 am | 204/Savannah International Trade and Convention Center | Break
Log in to add this item to your schedule | | | |
| 38009 | August 3rd 10:15 am | 204/Savannah International Trade and Convention Center | A fruitful endeavor: Using RAD-seq to reveal the evolutionary relationships of the mango genus
Log in to add this item to your schedule | Oral Paper | Warschefsky, Emily; von Wettberg, Eric. | phylogenomics
Anacardiaceae
RAD-seq
perennial crop
crop wild relative |
| 38010 | August 3rd 10:30 am | 204/Savannah International Trade and Convention Center | Phylogenomics of Temperate North American Milkweeds (Asclepias) based on 768 nuclear genes
Log in to add this item to your schedule | Oral Paper | Straub, Shannon C.K.; Liston, Aaron; Weitemier, Kevin; McDonnell, Angela Jean; Fishbein, Mark. | hyb-seq
targeted sequencing
Asclepias
Apocynaceae
phylogenomics
species tree |
| 38011 | August 3rd 10:45 am | 204/Savannah International Trade and Convention Center | Species tree estimation in Cucurbita provides new insight into the genetic diversity of multiple crop species and their wild relatives
Log in to add this item to your schedule | Oral Paper | Kates, Heather Rose; Soltis, Pamela S.; Soltis, Douglas. | Cucurbits
crop wild relatives
species tree
crop evolution
microfluidic PCR-based target enrichment
low-copy nuclear markers |
| 38012 | August 3rd 11:00 am | 204/Savannah International Trade and Convention Center | Genome-Guided Phylo-Transcriptomics
Log in to add this item to your schedule | Oral Paper | Washburn, Jacob; Pires, Joseph Chris. | phylogenomics
Genomics
Transcriptomics |
| 38013 | August 3rd 11:15 am | 204/Savannah International Trade and Convention Center | Phylogenetic study of the monocots using many single copy nuclear genes
Log in to add this item to your schedule | Oral Paper | Timilsena, Prakash Raj; Wafula, Eric K.; Leebens-Mack, Jim; dePamphilis, Claude W.. | phylogenomics
monocots
Phylotranscriptomics
low-copy nuclear markers
phylogeny
Plants Tribe |
| 38014 | August 3rd 11:30 am | 204/Savannah International Trade and Convention Center | A progress report: clarifying the evolutionary history of Leucaena (Leguminosae: Mimosoideae) using chloroplast, mitochondrial, and nuclear transcriptome data
Log in to add this item to your schedule | Oral Paper | Bailey, C. Donovan; Kovar, Lynsey; Madhugiri, Nageswara-Rao; Dugas, Diana V.; Muhyi, Noor R.; Ortega-Rodriguez, Sealtiel; Koenen, Erik; Hughes, Colin E.. | |
| 38015 | August 3rd 11:45 am | 204/Savannah International Trade and Convention Center | From phylotranscriptomics to anchored phylogenomics
Log in to add this item to your schedule | Oral Paper | Leebens-Mack, Jim; Heyduk, Karolina; Comer, Jason; Eserman, Lauren; Harkess, Alex; McKain, Michael. | phylogenomics
sequence capture |
